Phase 1 / reader bridge

No-fixture manual Reader bridge

A quote-grounded SimpleFold recipe was produced through the runner without using the engineering recipe fixture. This is manual curation, not autonomous Reader-agent extraction.

Fixture removed

no
The run did not use --recipe-fixture.

Reader mode

manual
Command adapter with quote-grounded curated output.

Inference

dry
No model inference was executed; this is not a reproduction result.

What This Proves

The local runner can now produce reader_raw.txt, recipe.json, verdict.json, and card.json without relying on the engineering fixture recipe. The SimpleFold recipe is grounded in primary-source text from the arXiv PDF and Apple repository.

What It Does Not Prove

This does not prove autonomous Reader-agent extraction, SimpleFold paper reproduction, or biological benchmark performance. The validator status is successful_with_caveat because dry-run scores are synthetic.

Extracted Recipe Snapshot

FieldValue
Run IDphase1-no-fixture-manual-simplefold-reader-2026-05-14-v2
Headline metricCASP14 SimpleFold-3B median LDDT
Published value0.709
Evaluation targets70 CASP14 target labels
Quote entries13
Audit entries100

Artifacts